Basic Information
Locus ID:
populus_peu20741
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 6470954 | 6477499 | + | populus_peu20741 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.94 | 122,686.95 Da | 64.09 | 54.85 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 662 | 791 | 1.6477E-61 | - |
| CDD | cd00268 | DEADc | 491 | 650 | 1.2183E-77 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 504 | 650 | 9.8E-43 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 674 | 782 | 1.9E-31 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 2.05E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 551 | 799 | 9.93E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 469 | 654 | 5.6E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 655 | 823 | 1.1E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 698 | 782 | 4.3E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 2.5E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 499 | 681 | 1.3E-48 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.7383 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 480 | 508 | 10.073256 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 677 | 821 | 24.904373 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 511 | 696 | 24.655733 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 631 | 639 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 921 | 1121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 1029 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 984 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_011011330.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 46 isoform X1 [Populus euphratica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3N7FN12 | DEAD-box ATP-dependent RNA helicase 46 OS=Populus trichocarpa OX=3694 GN=POPTR_010G152400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology