Basic Information
Locus ID:
populus_peu20370
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3721319 | 3723401 | - | populus_peu20370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 22,291.56 Da | 44.82 | 76.96 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 82 | 134 | 1.15577E-11 | - |
| Pfam | PF12906 | RING-variant domain | 82 | 133 | 8.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 136 | 6.71E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 143 | 2.1E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 81 | 134 | 9.0E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 74 | 140 | 18.860367 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 54 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011036028.1 | PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Populus euphratica] | 0 |
| TrEMBL | A0A8T2XVW1 | RING-CH-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_019622 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology