Basic Information
Locus ID:
populus_peu20308
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3282553 | 3284675 | - | populus_peu20308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 43,657.89 Da | 73.93 | 55.88 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 199 | 240 | 7.09351E-22 | - |
| Pfam | PF14369 | zinc-ribbon | 8 | 39 | 4.3E-12 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 273 | 388 | 1.2E-27 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 1.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 245 | 5.74E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 165 | 246 | 1.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 89 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_011002644.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Populus euphratica] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YXA9 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_010G201300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology