Basic Information
Locus ID:
populus_peu20133
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
MIZ/SP-RING zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2097083 | 2111332 | + | populus_peu20133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 124,260.72 Da | 40.57 | 83.10 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09728 | Myosin-like coiled-coil protein | 2 | 112 | 6.1E-34 | IPR026183 |
| Pfam | PF02891 | MIZ/SP-RING zinc finger | 509 | 557 | 5.8E-19 | IPR004181 |
| SUPERFAMILY | SSF68906 | SAP domain | 153 | 195 | 1.15E-12 | IPR036361 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 258 | 321 | 1.9E-11 | IPR011011 |
| Gene3D | G3DSA:1.10.720.30 | SAP domain | 152 | 206 | 2.5E-6 | IPR036361 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 488 | 597 | 1.0E-34 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 323 | 5.0E-24 | IPR013083 |
| SMART | SM00513 | sap_9 | 162 | 196 | 3.1E-4 | IPR003034 |
| ProSiteProfiles | PS50800 | SAP motif profile. | 162 | 196 | 10.904981 | IPR003034 |
| ProSiteProfiles | PS51044 | Zinc finger SP-RING-type profile. | 498 | 575 | 36.955032 | IPR004181 |
| Coils | Coil | Coil | 43 | 63 | - | - |
| Coils | Coil | Coil | 78 | 112 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60410.3 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain. Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. Regulates leaf cell division and expansion through salicylic acid accumulation. signaling | 0 |
| RefSeq | XP_011040955.1 | PREDICTED: LOW QUALITY PROTEIN: E3 SUMO-protein ligase SIZ1-like [Populus euphratica] | 0 |
| Q680Q4 | E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana OX=3702 GN=SIZ1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U5QZV9 | E3 SUMO-protein ligase SIZ1-like OS=Populus alba OX=43335 GN=D5086_0000017530 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35860, jg37540 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13010, gene_20874 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034018, Ah037721 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g036250, BVRB_9g208270 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg20719, Sbi_jg23035, Sbi_jg2470, Sbi_jg59706 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16908, Seu_jg24174 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009270, GOSA_00019725 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl62079, Sgl66640, Sgl78004, Sgl78635, Sgl81114, Sgl81125 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000015931, gene:ENSEOMG00000021789 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0012090, CQ.Regalona.r1.2BG0013580 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30058990, pistato.v30171410 |
| Apiaceae | Apium graveolens | 3 | Ag10G00550, Ag2G00942, Ag6G02249 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G014350, COCNU_16G006840 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702873, gene-LOC103705467, gene-LOC103706660 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.240.V1.1, AsparagusV1_02.241.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri11G02525, Ftri12G22172, Ftri15G10358, Ftri16G28693 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G60410.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002397m.g.v1.0, Thhalv10012623m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g16000.v2.2, Sp6g22000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g040190.2N, BniB05g040660.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0647, Ceq08G1751 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0657, Cgl08G1787 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0201s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g01620, gene.Thate06g02010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.946 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00014677, Pov_00016004, Pov_00032308 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb1G01991, Lb1G07478, Lb2G12479, Lb2G14846, Lb3G20907 ... |
| Poaceae | Echinochloa crus-galli | 5 | AH05.900, AH09.1971, BH05.903, BH09.2135, CH09.2277 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0378460, gene-QOZ80_5AG0406800 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0014340.1, HORVU.MOREX.r3.3HG0330990.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003781, gene-QYE76_009119, gene-QYE76_058510 ... |
| Poaceae | Oryza coarctata | 5 | Oco09G001240, Oco10G001320, Oco22G000020 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g50980.1, LOC_Os05g03430.1, LOC_Os07g25890.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G002400, gene-BS78_07G061500 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0103003, Pt_Chr0103639, Pt_Chr0103654, Pt_Chr0500149 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G013180, Chr06G022330, Chr07G022480, Chr12G023580 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G135700, Tel3E01G914900, Tel4E01G210000 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG009060, gene_TRIDC1BG011220 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS1A02G065700.2, TraesCS1B02G083900.5 ... |
| Poaceae | Zea mays | 3 | Zm00001eb163160_P002, Zm00001eb265410_P004 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-1720, nbis-gene-18298, nbis-gene-26942 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18318, Zma_g26340, Zma_g27622 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.1973, evm.TU.LG04.850, evm.TU.LG04.851 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g35770, gene.Posoc01g36250, gene.Posoc10g04440 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.339, evm.TU.Scaffold_13_RagTag.733 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24401, nbisL1-mrna-30317 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1688, nbisL1-mrna-19745, nbisL1-mrna-8234 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16110, nbisL1-mrna-19613 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.422, evm.TU.utg000027l.368 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015770, Maker00017911 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4342, nbisL1-mrna-5619 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11836, nbisL1-mrna-15069 |
| Salicaceae | Populus euphratica | 6 | populus_peu06301, populus_peu06302, populus_peu08379 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600440, gene-LOC132605953 |
| Solanaceae | Solanum chilense | 3 | SOLCI000058200, SOLCI004655600, SOLCI005580000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004529, gene-LOC107023585 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17146, gene_96 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1293, TC03G0012 |
| Zosteraceae | Zostera marina | 1 | Zosma02g21490.v3.1 |