Basic Information
Locus ID:
populus_peu20071
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1598831 | 1601441 | - | populus_peu20071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 53,897.16 Da | 43.80 | 93.14 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 413 | 451 | 9.0E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 353 | 478 | 3.3E-25 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 292 | 8.36E-9 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 10 | 120 | 3.8E-12 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 290 | 3.1E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 342 | 479 | 8.2E-29 | IPR011989 |
| SMART | SM00185 | arm_5 | 412 | 452 | 0.042 | IPR000225 |
| SMART | SM00185 | arm_5 | 371 | 411 | 0.29 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 251 | 290 | 10.970434 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 382 | 424 | 9.4674 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_011041060.1 | PREDICTED: U-box domain-containing protein 14-like [Populus euphratica] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YYR4 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_010G226500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology