Basic Information
Locus ID:
populus_peu20028
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1295846 | 1301010 | - | populus_peu20028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 74,481.85 Da | 58.23 | 60.39 | -1.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 594 | 634 | 2.04166E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 592 | 639 | 3.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 594 | 640 | 4.71E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 645 | 3.6E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 595 | 634 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 380 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024466324.1 | uncharacterized protein LOC7463470 isoform X1 [Populus trichocarpa] | 0 |
| Q24746 | Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T2XX18 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_019890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology