Basic Information
Locus ID:
populus_peu19824
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 166560 | 170555 | + | populus_peu19824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 29,837.74 Da | 55.67 | 92.93 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 72 | 120 | 5.1953E-18 | - |
| Pfam | PF12906 | RING-variant domain | 72 | 119 | 4.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 123 | 2.12E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 124 | 2.9E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 71 | 120 | 2.0E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 64 | 126 | 20.034008 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011046549.1 | PREDICTED: E3 ubiquitin-protein ligase MARCH8-like isoform X1 [Populus euphratica] | 0 |
| TrEMBL | A0A8T2XXS4 | RING-CH-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_020065 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology