Basic Information
Locus ID:
populus_peu19808
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 84027 | 86717 | + | populus_peu19808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 58,890.45 Da | 56.46 | 101.04 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 243 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 281 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 472 | 501 | 4.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 513 | 5.76E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 467 | 4.9E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 468 | 518 | 3.8E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 291 | 329 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 370 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 244 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 502 | 2.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 411 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 288 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 420 | 458 | 110.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 469 | 501 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 253 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 256 | 293 | 9.520146 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 469 | 501 | 8.729241 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 106 | 8.680911 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 256 | 297 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 248 | 9.467419 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 231 | 245 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011046605.1 | PREDICTED: WD repeat-containing protein 26 [Populus euphratica] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | B9HV05 | CTLH domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G254300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology