Basic Information
Locus ID:
populus_peu19797
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 21975 | 29928 | - | populus_peu19797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 78,679.56 Da | 36.35 | 85.00 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 223 | 3.94794E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 87 | 1.2E-4 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 559 | 716 | 3.4E-52 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 182 | 9.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 140 | 9.0E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 266 | 5.27E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 317 | 1.0E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 119 | 1.3E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 90 | 140 | 9.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 5.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 2.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 223 | 9.3 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 89 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 123 | 149 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 185 | 12.209223 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 191 | 15.35409 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 169 | 183 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 127 | 141 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 127 | 141 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 169 | 183 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 74 | 88 | 2.3E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 719 | 17.946634 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 307 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011046585.1 | PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Populus euphratica] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XXV7 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Populus deltoides OX=3696 GN=H0E87_020085 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology