Basic Information
Locus ID:
populus_peu18912
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 3457531 | 3463610 | - | populus_peu18912 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 43,751.30 Da | 63.61 | 79.75 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 198 | 241 | 3.94661E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 14 | 148 | 1.54654E-55 | IPR044744 |
| Pfam | PF02225 | PA domain | 64 | 143 | 4.8E-11 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 198 | 241 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 76 | 133 | 1.96E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 253 | 1.03E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 246 | 3.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 27 | 155 | 1.2E-26 | - |
| SMART | SM00184 | ring_2 | 199 | 240 | 3.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 241 | 12.312242 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_011001793.1 | PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2-like isoform X2 [Populus euphratica] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | B9IQI2 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G082500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology