Basic Information
Locus ID:
populus_peu18322
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24323417 | 24326595 | - | populus_peu18322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 61,465.76 Da | 42.23 | 79.82 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 29 | 149 | 1.2424E-32 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 336 | 417 | 3.15899E-18 | - |
| Pfam | PF08276 | PAN-like domain | 335 | 401 | 5.7E-18 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 71 | 175 | 1.1E-34 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 217 | 310 | 9.0E-20 | IPR000858 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 72 | 180 | 8.51E-29 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 427 | 516 | 2.3E-7 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 18 | 146 | 1.5E-23 | IPR036426 |
| SMART | SM00473 | ntp_6 | 336 | 417 | 1.2E-7 | IPR003609 |
| SMART | SM00108 | blect_4 | 29 | 149 | 3.7E-37 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 23 | 147 | 19.537735 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 335 | 418 | 9.236607 | IPR003609 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.4 | - | 0 |
| RefSeq | XP_011009492.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica] | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A3N7HDH1 | Receptor-like serine/threonine-protein kinase OS=Populus trichocarpa OX=3694 GN=POPTR_011G035700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |