Basic Information
Locus ID:
populus_peu18316
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24266181 | 24289437 | + | populus_peu18316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 81,355.24 Da | 42.08 | 89.29 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 58 | 179 | 5.78719E-30 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 364 | 445 | 2.89787E-15 | - |
| Pfam | PF01453 | D-mannose binding lectin | 100 | 205 | 2.0E-33 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 364 | 431 | 3.3E-15 | IPR003609 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 526 | 659 | 4.3E-27 | IPR001245 |
| Pfam | PF00954 | S-locus glycoprotein domain | 247 | 339 | 3.0E-19 | IPR000858 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 502 | 661 | 9.57E-48 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 101 | 210 | 1.83E-29 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 484 | 597 | 1.4E-39 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 47 | 176 | 3.1E-23 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 598 | 676 | 2.9E-15 | - |
| SMART | SM00473 | ntp_6 | 365 | 445 | 1.6E-8 | IPR003609 |
| SMART | SM00108 | blect_4 | 52 | 179 | 5.5E-34 | IPR001480 |
| SMART | SM00220 | serkin_6 | 522 | 710 | 3.2E-8 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 25 | 663 | 3.3E-193 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 52 | 176 | 19.409863 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 522 | 714 | 24.852531 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 364 | 446 | 9.428564 | IPR003609 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 528 | 550 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 643 | 655 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_011008152.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 isoform X1 [Populus euphratica] | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A2K1YF20 | Receptor-like serine/threonine-protein kinase OS=Populus trichocarpa OX=3694 GN=POPTR_011G034300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |