Basic Information
Locus ID:
populus_peu18315
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24248075 | 24251822 | + | populus_peu18315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 55,823.43 Da | 36.68 | 81.55 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 239 | 319 | 1.16669E-21 | - |
| Pfam | PF01453 | D-mannose binding lectin | 3 | 75 | 4.1E-21 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 107 | 220 | 5.0E-28 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 242 | 304 | 3.5E-17 | IPR003609 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 3 | 114 | 7.59E-15 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 385 | 463 | 2.2E-6 | - |
| SMART | SM00473 | ntp_6 | 243 | 318 | 5.5E-7 | IPR003609 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 187 | 223 | 9.441835 | IPR000742 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 242 | 319 | 10.529791 | IPR003609 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27290.2 | - | 0 |
| RefSeq | XP_024467621.2 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Populus trichocarpa] | 0 |
| O81832 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana OX=3702 GN=At4g27290 PE=3 SV=4 | 0 | |
| TrEMBL | A0A3N7HDJ2 | non-specific serine/threonine protein kinase OS=Populus trichocarpa OX=3694 GN=POPTR_011G037000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg18161, jg18162, jg18163, jg18164, jg18165, jg23599 |
| Anacardiaceae | Pistacia vera | 10 | pistato.v30014320, pistato.v30036750, pistato.v30036760 ... |
| Apiaceae | Apium graveolens | 1 | AgUnG01050 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18470.1 |
| Brassicaceae | Brassica nigra | 3 | BniB05g045300.2N, BniB08g009250.2N, BniB08g009270.2N |
| Plantaginaceae | Plantago ovata | 4 | Pov_00016931, Pov_00029256, Pov_00029257, Pov_00041214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1374, evm.TU.LG02.1375, evm.TU.LG09.595 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.347, evm.TU.Scaffold_8_RagTag.280 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3277 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3165 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13833 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21937 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16308 |
| Salicaceae | Populus euphratica | 5 | populus_peu00251, populus_peu00252, populus_peu00253 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635386, gene-LOC132637212 |