Basic Information
Locus ID:
populus_peu18275
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Protein TRANSPORT INHIBITOR RESPONSE 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 23758961 | 23765106 | + | populus_peu18275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 65,692.99 Da | 40.75 | 89.98 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 18 | 58 | 8.7E-21 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 77 | 123 | 1.4E-22 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 165 | 182 | 0.33 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 39 | 555 | 1.41E-36 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 51 | 1.31E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 582 | 4.3E-175 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 56 | 4.6E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 382 | 406 | 32.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 20 | 61 | 5.0E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 491 | 515 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 466 | 490 | 650.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 442 | 465 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 140 | 165 | 100.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_011043308.1 | PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Populus euphratica] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7YN91 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_039365 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology