Basic Information
Locus ID:
populus_peu18245
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 23481630 | 23491046 | + | populus_peu18245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 101,946.11 Da | 45.97 | 80.87 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 260 | 7.10425E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 7.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 2.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.24 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 790 | 924 | 3.3E-45 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 252 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 1.3E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 293 | 8.01E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 199 | 4.6E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 200 | 262 | 7.8E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.004 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 1.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.5E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.421944 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.182859 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.359182 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 4.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 4.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 4.5E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 927 | 18.309093 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 566 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_011043252.1 | PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Populus euphratica] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YFJ3 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Populus trichocarpa OX=3694 GN=POPTR_011G045500 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology