Basic Information
Locus ID:
populus_peu18237
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 23405856 | 23413973 | - | populus_peu18237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 112,741.75 Da | 51.99 | 73.17 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 617 | 899 | 2.9006E-77 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 637 | 977 | 8.5E-61 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 907 | 977 | 6.37E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 601 | 899 | 1.51E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 587 | 677 | 3.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 709 | 911 | 3.3E-38 | IPR038718 |
| SMART | SM00487 | ultradead3 | 613 | 878 | 1.1E-20 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 632 | 861 | 10.006092 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 701 | 724 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.2 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_011043239.1 | PREDICTED: uncharacterized protein LOC105138755 isoform X1 [Populus euphratica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XKH0 | Helicase-like transcription factor CHR28 OS=Populus deltoides OX=3696 GN=H0E87_020415 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology