Basic Information
Locus ID:
populus_peu18213
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 23006239 | 23014391 | - | populus_peu18213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 105,158.45 Da | 62.83 | 80.52 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 365 | 2.0E-6 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 672 | 737 | 5.46E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 150 | 390 | 5.77E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 817 | 893 | 9.1E-11 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 668 | 739 | 4.6E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 148 | 400 | 1.7E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 814 | 896 | 4.8E-7 | - |
| SMART | SM00358 | DRBM_3 | 818 | 887 | 0.013 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 673 | 737 | 9.3E-8 | IPR014720 |
| SMART | SM00577 | forpap2 | 200 | 374 | 4.8E-15 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 672 | 738 | 11.868275 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 817 | 888 | 10.266039 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 151 | 387 | 16.970518 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 610 | - | - |
| Coils | Coil | Coil | 16 | 40 | - | - |
| Coils | Coil | Coil | 172 | 192 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_011006883.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Populus euphratica] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | U5G0W4 | protein-serine/threonine phosphatase OS=Populus trichocarpa OX=3694 GN=POPTR_011G049400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology