Basic Information
Locus ID:
populus_peu18040
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 20298030 | 20300933 | - | populus_peu18040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 70,869.56 Da | 38.57 | 95.74 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 58 | 117 | 1.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 134 | 188 | 1.1E-6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 368 | 632 | 1.4E-21 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 342 | 636 | 1.59E-42 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 239 | 1.02E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 125 | 7.3E-15 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 324 | 439 | 4.0E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 641 | 7.6E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 126 | 249 | 3.5E-23 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 154 | 176 | 7.711955 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 364 | 642 | 19.834961 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45800.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011039421.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Populus euphratica] | 0 |
| Q9FK63 | Calmodulin-binding receptor kinase CaMRLK OS=Arabidopsis thaliana OX=3702 GN=CAMRLK PE=1 SV=1 | 0 | |
| TrEMBL | B9I1K0 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G067900 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22160 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017042 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g180990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40400, Sbi_jg50397 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1974 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011546 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43853, Sgl48622 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010651, gene:ENSEOMG00000032960 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0007190, CQ.Regalona.r1.8BG0008080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30072150 |
| Apiaceae | Apium graveolens | 5 | Ag11G04843, Ag6G01073, Ag7G00830, AgUnG00284, AgUnG00285 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002420, COCNU_03G013770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701183, gene-LOC103707330 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14489 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000810m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g062750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1322 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1477 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04390 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g23010, gene.Thate02g23020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7567 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.808 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005567 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00380, Lb1G00412 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.1924, AH07.993, BH05.143, BH06.1770, BH07.1109 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0107510, gene-QOZ80_2BG0161130 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0719210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021879, gene-QYE76_034317 |
| Poaceae | Oryza coarctata | 4 | Oco03G006520, Oco04G006770, Oco11G010630, Oco12G010700 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g14480.1, LOC_Os06g35200.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G100500, gene-BS78_K185300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0206420, Pt_Chr0400278, Pt_Chr0400433 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G032060, Chr0G013850, Chr10G015990, Chr11G006400 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G634500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG049170, gene_TRIDC7BG044670 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G352300.1, TraesCS7B02G275700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb204660_P001, Zm00001eb383780_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10293, nbis-gene-53124 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12500, Zma_g30654 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1383, evm.TU.LG20.504 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17850 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.799 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24037 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19054 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19942 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.152 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006317 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20930 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21965 |
| Salicaceae | Populus euphratica | 3 | populus_peu09929, populus_peu18023, populus_peu18040 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622685 |
| Solanaceae | Solanum chilense | 1 | SOLCI005478100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011876 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9750 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0427 |
| Zosteraceae | Zostera marina | 2 | Zosma05g21180.v3.1, Zosma05g25880.v3.1 |