Basic Information
Locus ID:
populus_peu18031
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 20157983 | 20161031 | - | populus_peu18031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 44,588.40 Da | 38.98 | 86.06 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 231 | 293 | 1.16527E-11 | - |
| Pfam | PF12906 | RING-variant domain | 231 | 292 | 2.4E-6 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 295 | 1.31E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 301 | 5.4E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 230 | 293 | 2.4E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 223 | 299 | 17.130791 | IPR011016 |
| Coils | Coil | Coil | 168 | 195 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011039402.1 | PREDICTED: uncharacterized protein LOC105135979 [Populus euphratica] | 0 |
| TrEMBL | A0A4U5QIR4 | Zinc finger family protein OS=Populus alba OX=43335 GN=D5086_0000082160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology