Basic Information
Locus ID:
populus_peu17849
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10548039 | 10550621 | - | populus_peu17849 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 69,736.14 Da | 47.42 | 91.11 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 151 | 167 | 0.53 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 332 | 567 | 1.6E-24 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 79 | 135 | 1.6E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 175 | 6.38E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 324 | 575 | 1.66E-44 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 387 | 586 | 1.4E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 212 | 3.8E-31 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 283 | 385 | 3.8E-13 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 312 | 573 | 24.866665 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 150 | 171 | 7.026593 | IPR001611 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 8.0 | - |
| Coils | Coil | Coil | 562 | 582 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36570.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011011138.1 | PREDICTED: probable inactive receptor kinase At2g26730 [Populus euphratica] | 0 |
| Q9SJQ1 | Leucine-rich repeat receptor-like protein kinase PXC1 OS=Arabidopsis thaliana OX=3702 GN=PXC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XPL2 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_020735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30155410 |
| Apiaceae | Apium graveolens | 2 | Ag2G01689, Ag3G00496 |
| Arecaceae | Cocos nucifera | 1 | scaffold000201G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698808, gene-LOC120109517 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G00878 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1426 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1597 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9058 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1974 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.106, evm.TU.Scaffold_8_RagTag.1618 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8737 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-398 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15073 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000028l.32, evm.TU.utg000018l.48 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20483 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23775 |
| Salicaceae | Populus euphratica | 3 | populus_peu17849, populus_peu33589, populus_peu33645 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617527 |
| Solanaceae | Solanum chilense | 1 | SOLCI007445400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025324 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19760.v3.1 |