Basic Information
Locus ID:
populus_peu17563
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 4588990 | 4591852 | - | populus_peu17563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 28,631.27 Da | 57.88 | 59.77 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 41 | 92 | 1.916E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 43 | 90 | 1.7E-7 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 96 | 5.18E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 159 | 3.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 43 | 90 | 3.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 43 | 91 | 12.563043 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 58 | 67 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 157 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_002316902.4 | E3 ubiquitin-protein ligase RMA3 [Populus trichocarpa] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1YJ41 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_011G120800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology