Basic Information
Locus ID:
populus_peu17089
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 274167 | 278323 | - | populus_peu17089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 35,952.08 Da | 53.63 | 74.97 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 44 | 129 | 3.49142E-51 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 244 | 307 | 3.53057E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 244 | 311 | 1.4E-11 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 46 | 129 | 3.9E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 42 | 139 | 5.89E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 241 | 314 | 6.68E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 34 | 146 | 6.9E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 229 | 316 | 2.3E-17 | IPR036910 |
| SMART | SM01014 | ARID_2 | 39 | 129 | 9.7E-31 | - |
| SMART | SM00398 | hmgende2 | 243 | 312 | 5.1E-12 | IPR009071 |
| SMART | SM00501 | bright_3 | 43 | 134 | 8.7E-36 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 244 | 311 | 13.340622 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 42 | 133 | 26.529619 | IPR001606 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 295 | 315 | 4.7E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 276 | 295 | 4.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 245 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_011000376.1 | PREDICTED: high mobility group B protein 10 isoform X1 [Populus euphratica] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | B9N5K1 | ARID domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G168800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology