Basic Information
Locus ID:
populus_peu17048
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 27497393 | 27505451 | + | populus_peu17048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 83,243.04 Da | 41.54 | 85.79 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 3.82284E-94 | - |
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 1.06994E-55 | - |
| Pfam | PF09382 | RQC domain | 401 | 497 | 3.0E-24 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 217 | 322 | 8.8E-21 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 1.8E-17 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 547 | 613 | 4.1E-13 | IPR002121 |
| Pfam | PF14493 | Helix-turn-helix domain | 653 | 735 | 6.9E-11 | IPR029491 |
| Pfam | PF16124 | RecQ zinc-binding | 348 | 396 | 3.5E-13 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 54 | 337 | 2.05E-54 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 541 | 622 | 1.26E-15 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 500 | 1.29E-24 | IPR036390 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 3.7E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 399 | 7.5E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 400 | 524 | 6.4E-35 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 539 | 626 | 1.3E-14 | IPR044876 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 1.6E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 7.2E-28 | IPR001650 |
| SMART | SM00341 | hrdc7 | 543 | 623 | 1.9E-4 | IPR002121 |
| SMART | SM00956 | RQC_2 | 404 | 508 | 3.5E-26 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 456 | 5.2E-152 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 543 | 623 | 18.381411 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 216 | 362 | 20.024563 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 21.556046 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.6 | - | 0 |
| RefSeq | XP_011008499.1 | PREDICTED: Werner syndrome ATP-dependent helicase-like isoform X1 [Populus euphratica] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T2XBS5 | ATP-dependent DNA helicase OS=Populus deltoides OX=3696 GN=H0E87_022969 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology