Basic Information
Locus ID:
populus_peu16955
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 26736763 | 26741460 | + | populus_peu16955 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 114,203.93 Da | 42.71 | 78.30 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 710 | 975 | 1.10808E-97 | - |
| CDD | cd01098 | PAN_AP_plant | 335 | 423 | 2.96242E-18 | - |
| CDD | cd00028 | B_lectin | 37 | 155 | 2.03236E-33 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 206 | 314 | 1.0E-22 | IPR000858 |
| Pfam | PF11883 | Domain of unknown function (DUF3403) | 977 | 1022 | 3.2E-7 | IPR021820 |
| Pfam | PF01453 | D-mannose binding lectin | 74 | 168 | 1.7E-27 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 707 | 971 | 7.2E-45 | IPR001245 |
| Pfam | PF08276 | PAN-like domain | 338 | 408 | 1.1E-12 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 690 | 1004 | 4.32E-83 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 75 | 180 | 7.85E-25 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 780 | 981 | 7.4E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 668 | 779 | 2.9E-36 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 19 | 153 | 9.2E-18 | IPR036426 |
| SMART | SM00473 | ntp_6 | 339 | 422 | 7.5E-9 | IPR003609 |
| SMART | SM00220 | serkin_6 | 704 | 948 | 1.7E-33 | IPR000719 |
| SMART | SM00108 | blect_4 | 29 | 155 | 4.8E-35 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 335 | 423 | 9.913507 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 25 | 148 | 16.967449 | IPR001480 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 281 | 317 | 9.702389 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 704 | 982 | 39.834572 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 825 | 837 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 997 | 1022 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03230.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_011048516.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X1 [Populus euphratica] | 0 |
| Q9ZR08 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana OX=3702 GN=At4g03230 PE=3 SV=3 | 0 | |
| TrEMBL | A0A2K1Y5X3 | non-specific serine/threonine protein kinase OS=Populus trichocarpa OX=3694 GN=POPTR_013G150800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah000566, Ah000567 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_5g117620, BVRB_5g117630, BVRB_5g117640, BVRB_5g117650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30579, Sbi_jg58673 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28540 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014903, GOSA_00014906, GOSA_00014908, GOSA_00014913 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl55195, Sgl55196, Sgl55199, Sgl60445, Sgl60447 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008135, gene:ENSEOMG00000021474 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023300, CQ.Regalona.r1.5BG0024780 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019010, pistato.v30019020 |
| Apiaceae | Apium graveolens | 3 | Ag11G03332, Ag11G03333, Ag11G03334 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G02911, Ftri4G05414 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03230.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03270.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 11 | Ceq02G2493, Ceq02G2500, Ceq02G2604, Ceq04G1183, Ceq05G2137 ... |
| Casuarinaceae | Casuarina glauca | 10 | Cgl02G2587, Cgl02G2592, Cgl04G1341, Cgl07G0430, Cgl07G0432 ... |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG04.1983, evm.TU.LG04.1984, evm.TU.LG04.1985 ... |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG01.2451, evm.TU.LG01.2452, evm.TU.LG01.2453 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1455, evm.TU.Scaffold_5_RagTag.1457 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11949, nbisL1-mrna-11951 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20422 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11031 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.837 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014027 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10263, nbisL1-mrna-10365 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15412, nbisL1-mrna-7222, nbisL1-mrna-7223 |
| Salicaceae | Populus euphratica | 3 | populus_peu16955, populus_peu18614, populus_peu18615 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132619497, gene-LOC132623522 |
| Solanaceae | Solanum chilense | 2 | SOLCI003380300, SOLCI004537700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010949, gene-LOC107024358 |