Basic Information
Locus ID:
populus_peu16677
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 23444235 | 23445255 | + | populus_peu16677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 23,812.85 Da | 31.34 | 99.29 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 2 | 159 | 1.4E-23 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 163 | 2.6E-41 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 182 | 4.7E-60 | - |
| SMART | SM00220 | serkin_6 | 1 | 162 | 0.0086 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 175 | 24.075161 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 11 | 23 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_023920454.1 | somatic embryogenesis receptor kinase 1-like [Quercus suber] | 0 |
| Q9XIC7 | Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | E7CV26 | Somatic embryogenesis receptor-like kinase 1 (Fragment) OS=Nicotiana attenuata OX=49451 GN=SERK1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30110870 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G006660 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020346 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31964 |
| Poaceae | Echinochloa crus-galli | 1 | BH05.1369 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17468, nbisL1-mrna-8036 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5751 |
| Salicaceae | Populus euphratica | 1 | populus_peu16677 |