Basic Information
Locus ID:
populus_peu16538
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Serine threonine-protein kinase-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 20053583 | 20055320 | - | populus_peu16538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 58,097.39 Da | 46.07 | 85.36 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 41 | 67 | 1.6E-5 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 277 | 488 | 3.1E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 255 | 498 | 1.35E-71 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 29 | 107 | 3.92E-7 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 246 | 360 | 4.2E-32 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 7 | 143 | 3.9E-8 | IPR009091 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 361 | 523 | 1.6E-44 | - |
| SMART | SM00220 | serkin_6 | 274 | 524 | 4.0E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 274 | 524 | 36.244537 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 406 | 418 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 280 | 302 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 240 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_011005429.1 | PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Populus euphratica] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1Y3T1 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G103300 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology