Basic Information
Locus ID:
populus_peu16412
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 16288788 | 16290692 | - | populus_peu16412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 13,984.08 Da | 45.74 | 79.75 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16128 | Ubl_ATG8 | 14 | 116 | 7.1541E-72 | - |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 16 | 119 | 1.5E-51 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 5 | 119 | 6.37E-44 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 120 | 1.2E-59 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05630.1 | Ubiquitin-like superfamily protein. in the Arabidopsis autophagy pathway | 0 |
| RefSeq | XP_011006463.1 | PREDICTED: autophagy-related protein 8C-like [Populus euphratica] | 0 |
| M1C146 | Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1 | 0 | |
| TrEMBL | A9PEE2 | Autophagy-related protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G228800 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology