Basic Information
Locus ID:
populus_peu16212
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6956100 | 6973989 | + | populus_peu16212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 125,094.77 Da | 43.61 | 82.10 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 484 | 9.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 918 | 952 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 494 | 1102 | 3.77E-38 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 329 | 659 | 1.69E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 972 | 1129 | 7.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 733 | 971 | 2.9E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 544 | 676 | 9.0E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 300 | 541 | 2.1E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 829 | 867 | 86.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1003 | 1045 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 437 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 484 | 6.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 574 | 130.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.1E-11 | IPR006595 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 8.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 15.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 954 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.302672 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 484 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 954 | 10.574686 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_011010172.1 | PREDICTED: protein TOPLESS-like isoform X1 [Populus euphratica] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | U5FS03 | Protein TOPLESS OS=Populus trichocarpa OX=3694 GN=POPTR_013G081300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology