Basic Information
Locus ID:
populus_peu16001
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 3672054 | 3674874 | + | populus_peu16001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 50,440.87 Da | 50.63 | 73.80 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 159 | 428 | 6.1273E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 292 | 4.0E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 175 | 233 | 2.3E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 428 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 343 | 0.084 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 429 | 2.7E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 431 | 8.6E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 253 | 292 | 3.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 164 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 343 | 0.0038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 249 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 386 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 208 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 5.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 396 | 429 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 176 | 208 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 292 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 396 | 429 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 292 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 176 | 217 | 11.811761 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 415 | 429 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 128 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_002319120.1 | cell division cycle 20.2, cofactor of APC complex [Populus trichocarpa] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | B9I5Q9 | ANAPC4_WD40 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G048900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology