Basic Information
Locus ID:
populus_peu15707
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1249527 | 1252772 | - | populus_peu15707 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 42,443.99 Da | 33.76 | 87.37 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 278 | 4.58E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 27 | 313 | 4.3E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 275 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 21 | 56 | 150.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_011023670.1 | PREDICTED: autophagy-related protein 18a-like [Populus euphratica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1XZL3 | Autophagy-related protein 18a-like OS=Populus trichocarpa OX=3694 GN=POPTR_013G018400 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology