Basic Information
Locus ID:
populus_peu15688
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1131208 | 1144446 | - | populus_peu15688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 155,509.16 Da | 41.54 | 102.90 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 173 | 339 | 2.60483E-25 | - |
| Pfam | PF16450 | Proteasomal ATPase OB C-terminal domain | 73 | 149 | 3.3E-16 | IPR032501 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 207 | 339 | 1.6E-41 | IPR003959 |
| Pfam | PF00931 | NB-ARC domain | 582 | 814 | 9.2E-43 | IPR002182 |
| Pfam | PF17862 | AAA+ lid domain | 362 | 397 | 2.8E-10 | IPR041569 |
| SUPERFAMILY | SSF52058 | L domain-like | 889 | 1355 | 5.89E-25 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 570 | 828 | 2.12E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 167 | 396 | 3.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 920 | 1375 | 7.2E-32 | IPR032675 |
| Gene3D | G3DSA:2.40.50.140 | - | 22 | 158 | 2.6E-18 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 159 | 340 | 9.0E-70 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 342 | 408 | 4.2E-20 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 728 | 817 | 1.1E-16 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 567 | 724 | 7.3E-29 | IPR027417 |
| SMART | SM00382 | AAA_5 | 593 | 729 | 3.0E-7 | IPR003593 |
| SMART | SM00382 | AAA_5 | 203 | 342 | 3.4E-23 | IPR003593 |
| TIGRFAM | TIGR01242 | 26Sp45: 26S proteasome subunit P45 family | 33 | 397 | 8.2E-124 | IPR005937 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1039 | 1060 | 7.049695 | IPR001611 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 310 | 328 | - | IPR003960 |
| PRINTS | PR00364 | Disease resistance protein signature | 669 | 683 | 2.5E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 596 | 611 | 2.5E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 762 | 776 | 2.5E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1035 | 1051 | 2.5E-17 | - |
| Coils | Coil | Coil | 854 | 874 | - | - |
| Coils | Coil | Coil | 28 | 69 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05530.1 | regulatory particle triple-A ATPase 5A. Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. | 0 |
| RefSeq | XP_011023690.1 | PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica] | 0 |
| P54776 | 26S proteasome regulatory subunit 6A homolog OS=Solanum lycopersicum OX=4081 GN=TBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5Q2J7 | 26S protease regulatory subunit 6A-like A (Fragment) OS=Populus alba OX=43335 GN=D5086_0000144990 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology