Basic Information
Locus ID:
populus_peu15646
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 883158 | 891883 | - | populus_peu15646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 122,107.95 Da | 38.37 | 84.24 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 894 | 927 | 0.0035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 451 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 330 | 932 | 8.63E-42 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 765 | 1067 | 4.3E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 264 | 504 | 3.6E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 505 | 664 | 1.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 729 | 947 | 5.2E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 948 | 1091 | 8.1E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 845 | 885 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 343 | 0.066 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 977 | 1019 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 888 | 927 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 543 | 583 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 540 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 404 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1031 | 1068 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 806 | 842 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 451 | 4.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 494 | 0.22 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 895 | 936 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.007684 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 352 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 561 | 592 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 895 | 930 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 452 | 9.205141 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 438 | 452 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1107 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_011023731.1 | PREDICTED: topless-related protein 3-like [Populus euphratica] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1XZ83 | Topless-related protein 3-like OS=Populus trichocarpa OX=3694 GN=POPTR_013G012100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology