Basic Information
Locus ID:
populus_peu15637
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
PHD and RING finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 820770 | 825377 | - | populus_peu15637 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 87,689.98 Da | 65.81 | 63.08 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16574 | RING-HC_Topors | 323 | 365 | 2.25994E-19 | - |
| Pfam | PF00628 | PHD-finger | 415 | 461 | 1.6E-9 | IPR019787 |
| Pfam | PF13639 | Ring finger domain | 322 | 365 | 1.0E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 371 | 1.52E-14 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 388 | 461 | 2.67E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 383 | 463 | 1.8E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 382 | 1.3E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 323 | 364 | 3.5E-5 | IPR001841 |
| SMART | SM00249 | PHD_3 | 415 | 460 | 3.3E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 413 | 462 | 9.676899 | IPR019787 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 323 | 365 | 12.135206 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 342 | 351 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 48 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05670.1 | RING/U-box protein. | 0 |
| RefSeq | XP_011023740.1 | PREDICTED: uncharacterized protein LOC105125136 isoform X1 [Populus euphratica] | 0 |
| Q9NRL2 | Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens OX=9606 GN=BAZ1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2XC87 | PHD and RING finger domain-containing protein 1 OS=Populus deltoides OX=3696 GN=H0E87_023077 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26527, jg28262 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10380 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005682 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g076600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17219, Sbi_jg61829 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg476 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015399 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24416, Sgl29591 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009935, gene:ENSEOMG00000030557 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0007440, CQ.Regalona.r1.4BG0007720 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30081940, pistato.v30082070, pistato.v30082100 |
| Apiaceae | Apium graveolens | 1 | Ag6G02063 |
| Arecaceae | Cocos nucifera | 1 | scaffold024213G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720028, gene-LOC120108412 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1338.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G20990 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G05670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020032m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g04540.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g057980.2N, BniB05g067800.2N, BniB07g032810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1137 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1184 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g04620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2515 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007189, Pov_00039226 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06598, Lb2G14161 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3911, BH01.4248, CH01.4540 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0245130, gene-QOZ80_3BG0282930 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0109660.1, HORVU.MOREX.r3.4HG0383230.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_038611, gene-QYE76_038612, gene-QYE76_068545 |
| Poaceae | Oryza coarctata | 4 | Oco05G011270, Oco06G011510, Oco13G016490, Oco14G017290 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g19020.1, LOC_Os07g49030.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G382100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305325, Pt_Chr0500117 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032590, Chr04G009320, Chr07G002400, Chr12G006950 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G203000, Tel4E01G334900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG010810, gene_TRIDC2BG013170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G094000.1, TraesCS2B02G108800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb396440_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1436, nbis-gene-1879, nbis-gene-3554 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1120, Zma_g1390, Zma_g3791 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.726, evm.TU.LG18.1288, evm.TU.LG20.599 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.2086 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-2899 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15205 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13662 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.38 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005172 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13000 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16132 |
| Salicaceae | Populus euphratica | 2 | populus_peu13319, populus_peu15637 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132643430, gene-LOC132646008 |
| Solanaceae | Solanum chilense | 1 | SOLCI002719200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007013 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32667_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0896 |