Basic Information
Locus ID:
populus_peu15609
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 626797 | 631498 | + | populus_peu15609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 59,433.31 Da | 52.03 | 53.71 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 496 | 527 | 1.2E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 395 | 480 | 9.2E-21 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 395 | 480 | 5.5E-33 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 446 | - | - |
| Coils | Coil | Coil | 387 | 421 | - | - |
| Coils | Coil | Coil | 433 | 453 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_011023790.1 | PREDICTED: uncharacterized protein LOC105125164 [Populus euphratica] | 0 |
| TrEMBL | B9I6Z0 | PAPA-1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G008300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology