Basic Information
Locus ID:
populus_peu15572
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 401695 | 403937 | + | populus_peu15572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 39,302.30 Da | 51.36 | 75.99 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 7 | 328 | 2.1E-89 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 2 | 357 | 1.65E-111 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 1 | 356 | 2.4E-105 | IPR012334 |
| SMART | SM00710 | pbh1 | 192 | 212 | 5900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 169 | 190 | 78.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 119 | 168 | 1700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 222 | 243 | 7.2 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 199 | 212 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_011023841.1 | PREDICTED: polygalacturonase At1g48100-like [Populus euphratica] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7YN31 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_043662 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology