Basic Information
Locus ID:
populus_peu15425
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 33846631 | 33849625 | - | populus_peu15425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 37,804.46 Da | 60.93 | 66.02 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 240 | 304 | 1.1899E-17 | - |
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 9.71557E-43 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 240 | 307 | 4.9E-11 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 35 | 116 | 6.9E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 237 | 310 | 3.01E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 23 | 126 | 1.57E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 224 | 319 | 3.5E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 22 | 127 | 3.4E-24 | IPR036431 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 3.1E-28 | - |
| SMART | SM00501 | bright_3 | 30 | 121 | 6.8E-31 | IPR001606 |
| SMART | SM00398 | hmgende2 | 239 | 308 | 8.1E-12 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 24.277376 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 240 | 307 | 14.171601 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 239 | - | - |
| Coils | Coil | Coil | 293 | 316 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_011003104.1 | PREDICTED: high mobility group B protein 9 [Populus euphratica] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2AM03 | High mobility group B protein 9 OS=Populus trichocarpa OX=3694 GN=POPTR_005G246700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology