Basic Information
Locus ID:
populus_peu15406
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
NEP1-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 33739629 | 33740645 | - | populus_peu15406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 24,048.02 Da | 44.62 | 98.42 | 0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 167 | 209 | 4.47841E-15 | - |
| Pfam | PF13639 | Ring finger domain | 166 | 209 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 213 | 1.47E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 212 | 1.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 167 | 208 | 5.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 209 | 11.869652 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35840.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011003081.1 | PREDICTED: NEP1-interacting protein-like 1 [Populus euphratica] | 0 |
| Q8GT75 | NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K2ALY9 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G244800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1302, evm.TU.Scaffold_8_RagTag.1307 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.438 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003086, Maker00003506 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3312 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11155 |
| Salicaceae | Populus euphratica | 2 | populus_peu15406, populus_peu33049 |