Basic Information
Locus ID:
populus_peu15273
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 32790108 | 32792611 | - | populus_peu15273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 61,937.88 Da | 32.76 | 69.06 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 401 | 534 | 8.15433E-43 | IPR033734 |
| CDD | cd09612 | Jacalin | 221 | 350 | 1.4618E-36 | IPR033734 |
| CDD | cd09612 | Jacalin | 21 | 150 | 1.16881E-42 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 221 | 350 | 3.4E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 401 | 533 | 5.8E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 21 | 152 | 2.5E-34 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 152 | 1.96E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 391 | 533 | 3.79E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 209 | 350 | 1.83E-39 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 3 | 150 | 3.2E-55 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 383 | 533 | 2.6E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 198 | 350 | 1.2E-47 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 401 | 535 | 3.3E-39 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 221 | 352 | 5.9E-34 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 21 | 152 | 2.6E-40 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 10 | 152 | 49.557632 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 390 | 535 | 53.374966 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 210 | 352 | 46.453117 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_011048835.1 | PREDICTED: jacalin-related lectin 3-like isoform X1 [Populus euphratica] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2AL92 | Jacalin-type lectin domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G232500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology