Basic Information
Locus ID:
populus_peu15013
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 30646919 | 30654978 | + | populus_peu15013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 65,116.20 Da | 46.08 | 94.11 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 2.17248E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 514 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 523 | 557 | 2.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 345 | 8.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 299 | 7.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 386 | 0.053 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 557 | 7.33E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 243 | 489 | 3.1E-42 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 490 | 576 | 1.3E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 5.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 9.2E-8 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 1.6E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.0099 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 567 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 10.550515 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.681386 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 302 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 11.497408 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 502 | 516 | 7.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 7.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 7.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_002306758.1 | WD repeat-containing protein 26 homolog [Populus trichocarpa] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | B9H856 | Transducin family protein / WD-40 repeat family protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G206600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology