Basic Information
Locus ID:
populus_peu14554
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 21437124 | 21444534 | - | populus_peu14554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 126,467.97 Da | 47.74 | 68.93 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 591 | 921 | 1.5E-40 | IPR001394 |
| Pfam | PF01753 | MYND finger | 77 | 114 | 7.5E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 73 | 117 | 2.27E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 587 | 926 | 1.14E-82 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 70 | 118 | 4.7E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 583 | 935 | 2.7E-87 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 591 | 924 | 47.270275 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.576741 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 592 | 607 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1057 | 1079 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1036 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1124 | 1148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 458 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_011013096.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like isoform X1 [Populus euphratica] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2AHA7 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Populus trichocarpa OX=3694 GN=POPTR_005G156900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology