Basic Information
Locus ID:
populus_peu14536
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 21046025 | 21047780 | + | populus_peu14536 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 36,015.29 Da | 63.54 | 57.55 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00065 | FYVE_like_SF | 182 | 224 | 0.00171799 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 162 | 225 | 2.3E-6 | IPR011011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 322 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002325641.1 | extra-large guanine nucleotide-binding protein 3 [Populus trichocarpa] | 0 |
| TrEMBL | B9INL9 | FYVE-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G130200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8409 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064330 |
| Apiaceae | Apium graveolens | 1 | Ag7G00129 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.532.V1.1, AsparagusV1_07.534.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G12854 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2449 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.553 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036744 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.15, BH09.75, CH09.54 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0617090, gene-QOZ80_8BG0644650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0331110.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco02G032570 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g74620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G001900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr26G000640 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G602600.1.cds1, TraesCS3D02G542200.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb419060_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46876 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19197 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.412 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1892 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19676 |
| Salicaceae | Populus euphratica | 2 | populus_peu14536, populus_peu17017 |