Basic Information
Locus ID:
populus_peu14505
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 20595623 | 20602661 | + | populus_peu14505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 79,170.26 Da | 32.63 | 75.11 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 383 | 482 | 1.85797E-32 | IPR029413 |
| CDD | cd10317 | RGL4_C | 494 | 681 | 9.66947E-59 | - |
| CDD | cd10320 | RGL4_N | 66 | 345 | 2.29243E-81 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 59 | 252 | 5.7E-89 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 492 | 680 | 3.6E-56 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 406 | 476 | 3.3E-25 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 426 | 466 | 8.44E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 489 | 681 | 2.81E-52 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 66 | 345 | 1.48E-6 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 60 | 345 | 1.5E-6 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 490 | 681 | 1.1E-23 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 381 | 474 | 2.2E-6 | - |
| Coils | Coil | Coil | 596 | 616 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_011003640.1 | PREDICTED: rhamnogalacturonate lyase B-like [Populus euphratica] | 0 |
| TrEMBL | A0A4U5QUW6 | rhamnogalacturonan endolyase OS=Populus alba OX=43335 GN=D5086_0000038940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology