Basic Information
Locus ID:
populus_peu14295
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11279391 | 11281370 | - | populus_peu14295 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 25,035.90 Da | 50.04 | 61.06 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 29 | 73 | 2.57237E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 30 | 71 | 1.4E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 84 | 3.33E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 86 | 1.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 31 | 71 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 31 | 72 | 13.374458 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 46 | 55 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 116 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034889926.1 | E3 ubiquitin-protein ligase RNF185-like [Populus alba] | 0 |
| Q96GF1 | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2AFZ6 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_005G127900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology