Basic Information
Locus ID:
populus_peu14263
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10677002 | 10678884 | + | populus_peu14263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 21,900.78 Da | 41.60 | 64.42 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 4 | 43 | 2.68968E-25 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 3 | 41 | 1.0E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 54 | 2.21E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 53 | 2.8E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 4 | 42 | 11.235273 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 16 | 25 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 86 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034889926.1 | E3 ubiquitin-protein ligase RNF185-like [Populus alba] | 0 |
| Q96GF1 | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5PST6 | RING-type E3 ubiquitin transferase OS=Populus alba OX=43335 GN=D5086_0000183670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology