Basic Information
Locus ID:
populus_peu14130
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8846899 | 8847512 | - | populus_peu14130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 19,955.83 Da | 65.50 | 57.85 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 95 | 139 | 8.19626E-20 | - |
| Pfam | PF13639 | Ring finger domain | 95 | 139 | 7.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 145 | 4.99E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 149 | 4.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 96 | 138 | 2.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 139 | 13.167916 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 49 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17450.1 | RING-H2 finger A3A. Encodes a putative RING-H2 finger protein RHA3a. | 0 |
| RefSeq | XP_011043187.1 | PREDICTED: RING-H2 finger protein ATL39-like [Populus euphratica] | 0 |
| O22755 | Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1 | 0 | |
| TrEMBL | U5GF02 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G113200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.104 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-258 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14319 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5898 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.484 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006795 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19390 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2421 |
| Salicaceae | Populus euphratica | 2 | populus_peu14130, populus_peu23263 |