Basic Information
Locus ID:
populus_peu14108
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8625422 | 8629109 | + | populus_peu14108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 31,723.67 Da | 33.48 | 94.40 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 227 | 270 | 2.84809E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 22 | 152 | 3.41222E-39 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 227 | 270 | 2.1E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 61 | 139 | 3.4E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 70 | 147 | 4.45E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 275 | 2.15E-17 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 35 | 151 | 3.9E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 279 | 1.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 228 | 269 | 2.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 270 | 12.858103 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_024457805.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus trichocarpa] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2AF51 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G111100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology