Basic Information
Locus ID:
populus_peu14072
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8229654 | 8235334 | - | populus_peu14072 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 84,167.90 Da | 52.73 | 80.25 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 228 | 356 | 1.53307E-59 | - |
| CDD | cd17920 | DEXHc_RecQ | 27 | 227 | 3.94157E-106 | - |
| Pfam | PF16124 | RecQ zinc-binding | 360 | 431 | 7.0E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 42 | 207 | 7.8E-20 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 259 | 345 | 1.6E-8 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 77 | 368 | 3.37E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 228 | 449 | 1.1E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 6 | 227 | 2.2E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 34 | 236 | 3.8E-33 | IPR014001 |
| SMART | SM00490 | helicmild6 | 271 | 347 | 1.0E-13 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 28 | 435 | 1.1E-136 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 220 | 24.108728 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 247 | 391 | 12.301514 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 650 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_011022247.1 | PREDICTED: ATP-dependent DNA helicase Q-like 3 isoform X4 [Populus euphratica] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | U5GEU8 | ATP-dependent DNA helicase OS=Populus trichocarpa OX=3694 GN=POPTR_005G107400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology