Basic Information
Locus ID:
populus_peu13958
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7046181 | 7047422 | + | populus_peu13958 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.48 | 20,831.83 Da | 47.12 | 72.06 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 30 | 88 | 1.4E-16 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 130 | 177 | 6.5E-18 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 103 | 176 | 4.84E-16 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 30 | 89 | 4.08E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 25 | 180 | 2.2E-44 | IPR011333 |
| SMART | SM00512 | skp1_3 | 29 | 129 | 5.9E-9 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 10 | 180 | 1.5E-39 | IPR016897 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03170.1 | SKP1-like 14. | 0 |
| RefSeq | XP_011022074.1 | PREDICTED: SKP1-like protein 14 [Populus euphratica] | 0 |
| O81057 | SKP1-like protein 14 OS=Arabidopsis thaliana OX=3702 GN=ASK14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2EUZ2 | SKP1-like protein OS=Populus davidiana OX=266767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30188250, pistato.v30188360 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1697, Ceq01G2096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2295 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g03070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2949 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_18_RagTag.285, evm.TU.Scaffold_5_RagTag.39 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10441, nbisL1-mrna-9209 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10718, nbisL1-mrna-7776 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000006l.5, add.evm.TU.utg000023l.119 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013746 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20457 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17179, nbisL1-mrna-6866 |
| Salicaceae | Populus euphratica | 2 | populus_peu13958, populus_peu26353 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1128 |