Basic Information
Locus ID:
populus_peu13847
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5964219 | 5971356 | - | populus_peu13847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 57,895.99 Da | 42.00 | 96.75 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 305 | 508 | 1.2E-42 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 143 | 180 | 2.0E-6 | IPR025875 |
| Pfam | PF00560 | Leucine Rich Repeat | 96 | 118 | 1.9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 9.9E-10 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 194 | 3.74E-38 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 516 | 7.11E-71 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 521 | 7.1E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 214 | 9.5E-63 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 273 | 380 | 7.0E-39 | - |
| SMART | SM00220 | serkin_6 | 304 | 526 | 1.2E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 304 | 527 | 35.509567 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 310 | 332 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 427 | 439 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_011021921.1 | PREDICTED: somatic embryogenesis receptor kinase 1-like isoform X1 [Populus euphratica] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | B9H599 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G083300 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology