Basic Information
Locus ID:
populus_peu13437
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2384824 | 2391500 | - | populus_peu13437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 48,987.48 Da | 67.51 | 62.67 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 372 | 412 | 1.62122E-24 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 371 | 417 | 1.0E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 365 | 420 | 1.65E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 356 | 423 | 7.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 373 | 411 | 2.7E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 342 | 424 | 4.0E-9 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 3 | 82 | 470.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 373 | 412 | 11.781134 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 73 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011036756.1 | PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X2 [Populus euphratica] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | U5GA61 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_005G036400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology